Primer Design


RAPD Primer Design from Metagenomes  v.1.0

RAPD Primer Design from Metagenomes (RPD-M) scans metagenome sequences identifying and determining relative frequency of candidate primers for Random Amplification of Polymorphic DNA (RAPD) assays.

ORFprimer - primer design for ORFs  v.1.0

ORFer reads the NCBI GenBank XML sequence format and extracts open reading frames for proteins.


Primer Premier  v.6 10

Primer Premier is a comprehensive primer design application.PCR primer design- design primer pairs for PCR and multiplex experiments.Cross species- Amplify sequences from multiple species.

JCVI Primer Designer  v.20101122

This is the high throughput PCR primer design software that is used at the J.

NoePrimer  v.2.03

NoePrimer is designed specifically to meet the growing demand for simplifying increasingly complex primer searches in versatile molecular applications.

PerlPrimer  v.1. 1. 2020

PerlPrimer is a free, open-source GUI application written in Perl that designs primers for standard PCR, bisulphite PCR, real-time PCR (QPCR) and sequencing. It aims to automate and simplify the process of primer design.

Clone Manager Professional  v.9 2

Clone Manager Professional provides a comprehensive, fully integrated set of tools for enzyme operations, cloning simulation, graphic map drawing, primer design and analysis, global and local sequence alignments, similarity searches, and laboratory-s

SeqState  v.1.4.1

Analyze fasta file with this application. SeqState offer you a primer design, sequence statistics, and indel coding according to various schemes.Requirements: *

Sequence Analysis  v.1.6

Sequence editing, reverse complement, protein translation, ORF finding, secondary structure, composition, isoelectric point, primer design, pairwise comparison, publish layout, sequence reformatting.

AlleleID  v.7.01

AlleleID is a comprehensive desktop tool designed to address the challenges of pathogen detection, bacterial identification or taxa/species discrimination using microarrays and TaqMan® and molecular beacon qPCR assays.

Intron marker pipeline  v.1.0

IMP is an automated tool for intron-flanking primer design based off of Expressed Sequence Tags (ESTs).

Beacon Designer  v.7 91

Beacon Designer™ automates the design of real time primers and probes. It is used by molecular biologists worldwide to design successful real time PCR assays. It saves the time and the money involved in failed experiments.

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